{
  "_id": "6a106e1eacfb0bcc41cab0d5",
  "Package": "beaver",
  "Title": "Bayesian Model Averaging of Covariate Adjusted Negative-Binomial\nDose-Response",
  "Version": "1.0.0",
  "Authors@R": "c(\nperson(given = \"Richard\",\nfamily = \"Payne\",\nrole = c(\"aut\"),\nemail = \"paynestatistics@gmail.com\"),\nperson(given = \"Hollins\",\nfamily = \"Showalter\",\nrole = c(\"aut\", \"cre\"),\nemail = \"hollins.showalter@gmail.com\"),\nperson(family = \"Eli Lilly and Company\",\nrole = \"cph\"))",
  "Description": "Dose-response modeling for negative-binomial distributed\ndata with a variety of dose-response models. Covariate\nadjustment and Bayesian model averaging is supported. Functions\nare provided to easily obtain inference on the dose-response\nrelationship and plot the dose-response curve.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/rich-payne/beaver",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake make jags libicu-dev libuv1-dev",
  "Repository": "https://rich-payne.r-universe.dev",
  "Date/Publication": "2024-05-21 21:27:39 UTC",
  "RemoteUrl": "https://github.com/rich-payne/beaver",
  "RemoteRef": "HEAD",
  "RemoteSha": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-07 08:11:44 UTC",
    "User": "root"
  },
  "Author": "Richard Payne [aut],\nHollins Showalter [aut, cre],\nEli Lilly and Company [cph]",
  "Maintainer": "Hollins Showalter <hollins.showalter@gmail.com>",
  "MD5sum": "ca3a182df9085b0c49e01ab6964b6b40",
  "_user": "rich-payne",
  "_type": "src",
  "_file": "beaver_1.0.0.tar.gz",
  "_fileid": "11f8208567acbfd15bf345a2799f9834999b93f1dc20dfc2a5cfbca901b7fb40",
  "_filesize": 810080,
  "_sha256": "11f8208567acbfd15bf345a2799f9834999b93f1dc20dfc2a5cfbca901b7fb40",
  "_created": "2026-05-07T08:11:44.000Z",
  "_published": "2026-05-22T14:54:22.365Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77404670540,
      "time": 311,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6850164811"
    },
    {
      "job": 77404670840,
      "time": 305,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6850162864"
    },
    {
      "job": 77404670832,
      "time": 339,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6850170871"
    },
    {
      "job": 77404670764,
      "time": 175,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6850122448"
    },
    {
      "job": 77404670311,
      "time": 176,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6850070489"
    },
    {
      "job": 77404669638,
      "time": 107,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7163513425"
    },
    {
      "job": 77404670526,
      "time": 370,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6850180521"
    },
    {
      "job": 77404671069,
      "time": 303,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6850160563"
    },
    {
      "job": 77404670561,
      "time": 308,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6850161993"
    }
  ],
  "_buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/rich-payne/beaver",
  "_commit": {
    "id": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
    "author": "Hollins Showalter <hdhshowalter@lilly.com>",
    "committer": "Hollins Showalter <hdhshowalter@lilly.com>",
    "message": "Donttest example\n",
    "time": 1716326859
  },
  "_maintainer": {
    "name": "Hollins Showalter",
    "email": "hollins.showalter@gmail.com",
    "login": "hdhshowalter",
    "uuid": 166844331
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "checkmate",
      "version": ">= 2.1",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "version": ">= 1.0",
      "role": "Imports"
    },
    {
      "package": "ellipsis",
      "version": ">= 0.3",
      "role": "Imports"
    },
    {
      "package": "fs",
      "version": ">= 1.5",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 3.3",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "version": ">= 0.3",
      "role": "Imports"
    },
    {
      "package": "rjags",
      "version": ">= 4.12",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "version": ">= 1.0",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "version": ">= 1.5",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "version": ">= 3.1",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "version": ">= 1.1",
      "role": "Imports"
    },
    {
      "package": "yodel",
      "version": ">= 1.0",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "rich-payne",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "hdhshowalter-lilly",
      "count": 3,
      "uuid": 25933155
    },
    {
      "user": "rich-payne",
      "count": 1,
      "uuid": 39996197
    }
  ],
  "_userbio": {
    "uuid": 39996197,
    "type": "user",
    "name": "Richard Payne",
    "description": "Statistician specializing in Bayesian methods and R-package development."
  },
  "_downloads": {
    "count": 217,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/beaver"
  },
  "_devurl": "https://github.com/rich-payne/beaver",
  "_searchresults": 78,
  "_topics": [
    "jags",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/beaver.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/rich-payne/beaver",
  "_realowner": "rich-payne",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2024-05-22"
    }
  ],
  "_exports": [
    "beaver_mcmc",
    "data_negbin_emax",
    "draws",
    "model_negbin_emax",
    "model_negbin_exp",
    "model_negbin_indep",
    "model_negbin_linear",
    "model_negbin_loglinear",
    "model_negbin_logquad",
    "model_negbin_quad",
    "model_negbin_sigmoid_emax",
    "posterior",
    "posterior_g_comp",
    "pr_eoi",
    "pr_eoi_g_comp"
  ],
  "_help": [
    {
      "page": "beaver_mcmc",
      "title": "Bayesian Model Averaging of Covariate Adjusted Neg-Binomial Dose-Response",
      "concept": [
        "models",
        "posterior calculations"
      ],
      "topics": [
        "beaver_mcmc"
      ]
    },
    {
      "page": "data_negbin_emax",
      "title": "Generate data from a negative binomial EMAX model",
      "topics": [
        "data_negbin_emax"
      ]
    },
    {
      "page": "draws",
      "title": "Posterior Draws",
      "topics": [
        "draws",
        "draws.beaver_mcmc",
        "draws.beaver_mcmc_bma"
      ]
    },
    {
      "page": "model_negbin_emax",
      "title": "Negative Binomial EMAX Dose Response",
      "concept": [
        "models"
      ],
      "topics": [
        "model_negbin_emax"
      ]
    },
    {
      "page": "model_negbin_exp",
      "title": "Negative Binomial Exponential Dose Response",
      "concept": [
        "models"
      ],
      "topics": [
        "model_negbin_exp"
      ]
    },
    {
      "page": "model_negbin_indep",
      "title": "Negative Binomial Independent Dose Response",
      "concept": [
        "models"
      ],
      "topics": [
        "model_negbin_indep"
      ]
    },
    {
      "page": "model_negbin_linear",
      "title": "Negative Binomial Linear Dose Response",
      "concept": [
        "models"
      ],
      "topics": [
        "model_negbin_linear"
      ]
    },
    {
      "page": "model_negbin_loglinear",
      "title": "Negative Binomial Log-Linear Dose Response",
      "concept": [
        "models"
      ],
      "topics": [
        "model_negbin_loglinear"
      ]
    },
    {
      "page": "model_negbin_logquad",
      "title": "Negative Binomial Log-Quadratic Dose Response",
      "concept": [
        "models"
      ],
      "topics": [
        "model_negbin_logquad"
      ]
    },
    {
      "page": "model_negbin_quad",
      "title": "Negative Binomial Quadratic Dose Response",
      "concept": [
        "models"
      ],
      "topics": [
        "model_negbin_quad"
      ]
    },
    {
      "page": "model_negbin_sigmoid_emax",
      "title": "Negative Binomial Sigmoidal EMAX Dose Response",
      "concept": [
        "models"
      ],
      "topics": [
        "model_negbin_sigmoid_emax"
      ]
    },
    {
      "page": "posterior_g_comp",
      "title": "Compute Posterior G-Computation Estimate",
      "concept": [
        "posterior calculations"
      ],
      "topics": [
        "posterior_g_comp"
      ]
    },
    {
      "page": "posterior.beaver_mcmc",
      "title": "Posterior Samples from Bayesian Model Averaging",
      "concept": [
        "posterior calculations"
      ],
      "topics": [
        "posterior.beaver_mcmc"
      ]
    },
    {
      "page": "posterior.beaver_mcmc_bma",
      "title": "Posterior Samples from Bayesian Model Averaging",
      "concept": [
        "posterior calculations"
      ],
      "topics": [
        "posterior.beaver_mcmc_bma"
      ]
    },
    {
      "page": "pr_eoi",
      "title": "Calculate Probability of Meeting Effect of Interest",
      "concept": [
        "posterior calculations"
      ],
      "topics": [
        "pr_eoi"
      ]
    },
    {
      "page": "pr_eoi_g_comp",
      "title": "Calculate Probability of Meeting Effect of Interest using G-Computation",
      "concept": [
        "posterior calculations"
      ],
      "topics": [
        "pr_eoi_g_comp"
      ]
    }
  ],
  "_readme": "https://github.com/rich-payne/beaver/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "checkmate",
    "cli",
    "coda",
    "cpp11",
    "dplyr",
    "ellipsis",
    "farver",
    "fs",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "rjags",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "yodel"
  ],
  "_sysdeps": [
    {
      "shlib": "libjags",
      "package": "jags",
      "headers": "jags",
      "source": "jags",
      "version": "4.3.2-2.2404.0",
      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler.  It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary."
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 3.591064607026499,
  "_indexed": true,
  "_nocasepkg": "beaver",
  "_universes": [
    "rich-payne",
    "hdhshowalter"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-07T08:14:00.000Z",
      "distro": "noble",
      "commit": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
      "fileid": "b87038fdc9abde665d0d10aa4b178d37b673553f4f8dcc7f5bd031f94e284600",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-07T08:13:55.000Z",
      "distro": "noble",
      "commit": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
      "fileid": "541e6e949a3c60a7ba309f09daf5351386bd9519fe57e09bd700545f9739e691",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-07T08:13:45.000Z",
      "commit": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
      "fileid": "8baece2f79718147c21028a7bf60959844b399db06e156d4353033e4989c25ab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-07T08:13:14.000Z",
      "commit": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
      "fileid": "6b9befaaee73952f25ae4f39448d122c35358052063dcc286f51a46eae33e0f6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-07T08:13:16.000Z",
      "commit": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
      "fileid": "54c00f783a8cd291d1083fc371791da28bf3e1e5e2df95eb8e58119b4d5b183e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-07T08:13:15.000Z",
      "commit": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
      "fileid": "cc4cae909b8db1018f60485ad01b028fee2fd4d53d6700b785c4f92a071a6837",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-07T08:13:15.000Z",
      "commit": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
      "fileid": "642f20067b493f663b050041331a3a65229c4b0a46b580bd511c615f592ab674",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-05-22T14:54:04.000Z",
      "commit": "4de4f344773dfbd911dbbdba8707cd4cf6a6e72a",
      "fileid": "4c24824f313c25cc512027c3355af0bb89dda7f07bb66a2ae8718213f97f972c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rich-payne/actions/runs/25483939138"
    }
  ]
}